PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g75595.1.p
Common NameBRADI_1g75595, LOC100845362
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 255aa    MW: 29408.9 Da    PI: 6.3583
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g75595.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+ Ed ll ++v+q G g+W+++a+  g++R++k+c++rw +yl
  Bradi1g75595.1.p 15 KGPWTELEDRLLTEYVQQQGEGSWNSVAKLTGLRRSGKSCRLRWVNYL 62
                      79********************************************97 PP

2Myb_DNA-binding537.7e-1768112147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ T++E+  +++++++lG++ W++Iar+++ gRt++++k++w+++
  Bradi1g75595.1.p  68 RGKITPDEETVILQLHAMLGNR-WSAIARCLP-GRTDNEIKNYWRTH 112
                       8999******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3481062IPR017930Myb domain
SuperFamilySSF466898.58E-3013109IPR009057Homeodomain-like
SMARTSM007178.5E-141464IPR001005SANT/Myb domain
PfamPF002491.4E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221669IPR009057Homeodomain-like
CDDcd001673.92E-101762No hitNo description
PROSITE profilePS5129423.40363117IPR017930Myb domain
SMARTSM007179.9E-1667115IPR001005SANT/Myb domain
PfamPF002499.6E-1568112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2470115IPR009057Homeodomain-like
CDDcd001673.05E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDAISSLMLQ GGWRKGPWTE LEDRLLTEYV QQQGEGSWNS VAKLTGLRRS GKSCRLRWVN  60
YLRPDLKRGK ITPDEETVIL QLHAMLGNRW SAIARCLPGR TDNEIKNYWR THFKKARPSR  120
RARAQLLHQY QLQQQQQHRR YLHLLQQQQM QQVMEQNQQQ ILQQQQQQQQ QQEKQLLQSP  180
QEDDLQAMLM SIDIQGTPTA NECYCPCLVT STATTPDDVL AASVDEDDDD ALWDSLWRLV  240
DGDGRSSGGD SGEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271511527126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9604501e-162EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562106.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A0Q3SFB80.0A0A0Q3SFB8_BRADI; Uncharacterized protein
STRINGMLOC_9927.21e-107(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132282433
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-59myb domain protein 305